Commits · a85ebb651e96df9fe85c37dbc87fc2bd3ce3f487 · hpc-kyb / mrdata common public

Jul 05, 2024
- put back in a default for lz_basepath to be used if env var isn't set · a85ebb65
  Blake Fitch authored 9 months ago
  
  View commits for tag STAG-2024-07-05-14-51-17 STAG-2024-07-05-14-51-17
  
  a85ebb65
Jul 03, 2024
- separate case of skipping zero len file from removing (unlinking) preexisting... · ce7841bc
  Blake Fitch authored 9 months ago
  
  separate case of skipping zero len file from removing (unlinking) preexisting iRODS object for replace_existing flag
  ce7841bc
- pull RDS_Samba path from ENV VARS · 881777c8
  Blake Fitch authored 9 months ago
  
  881777c8
Jul 01, 2024
- enable proper handling of dcm2niix stdout and stderr when additional DICOM files come for a series · deaf7535
  Blake Fitch authored 9 months ago
  
  deaf7535
Jun 30, 2024
- remove a , · d6c0daaf
  Blake Fitch authored 9 months ago
  
  d6c0daaf
- enable removing old confirmed_put files (objects) when skip_on_zero_len and replace_existing · 622c27e1
  Blake Fitch authored 9 months ago
  
  622c27e1
Jun 26, 2024
- Can't just validate experiment id with lower case. caller must upper case it before call or else. · b0b3eb2d
  Blake Fitch authored 9 months ago
  
  View commits for tag STAG-2024-06-26-08-38-21 STAG-2024-06-26-08-38-21
  
  b0b3eb2d
- Can't just validate experiment id with lower case. caller must upper case it before call or else. · dcec58e0
  Blake Fitch authored 9 months ago
  
  dcec58e0
Jun 22, 2024
- add replace_existing flag and function to confirmed_put() · 1096bfff
  Blake Fitch authored 10 months ago
  
  View commits for tag STAG-2024-06-23-13-13-11 STAG-2024-06-23-13-13-11
  
  1096bfff
May 29, 2024
- enable experiment_id_validate() to return true with lowercase letters. · 2cd63f06
  Blake Fitch authored 10 months ago
  
  View commits for tag STAG-2024-06-17-15-13-08 STAG-2024-06-17-15-13-08
  
  2cd63f06
May 03, 2024
- clean up relative paths · 071ddb31
  Blake Fitch authored 11 months ago
  
  View commits for tag STAG-2024-05-04-09-11-44 STAG-2024-05-04-09-11-44
  
  071ddb31
- fix up error logging · 3359e0bd
  Blake Fitch authored 11 months ago
  
  3359e0bd
May 02, 2024
- properly reach over to neighboring module to import · 0c361a20
  Blake Fitch authored 11 months ago
  
  0c361a20
- fix checksum checking. · cee3409c
  Blake Fitch authored 11 months ago
  
  cee3409c
Apr 29, 2024
- add ability to provide path to ssh ca cert · d9c4556f
  Blake Fitch authored 11 months ago
  
  d9c4556f
Apr 15, 2024
- reduce log lines on object mismatch to one · f8b3dbf9
  Blake Fitch authored 1 year ago
  
  View commits for tag STAG-2024-04-15-20-30-24 STAG-2024-04-15-20-30-24
  
  f8b3dbf9
Apr 11, 2024
- enable setting the exp id via and external number at the interface or... · 2768f7f8
  Blake Fitch authored 1 year ago
  
  enable setting the exp id via and external number at the interface or RegisterNewExperiment() for testing
  2768f7f8
Apr 07, 2024
- Merge branch 'main' of https://gitlab.tuebingen.mpg.de/hpc-kyb/mrdata-common-public · a5519515
  Blake Fitch authored 1 year ago
  
  View commits for tag STAG-2024-04-09-13-28-17 STAG-2024-04-09-13-28-17
  
  a5519515
- fix accept_undefined_user method · 19b0cd1d
  Blake Fitch authored 1 year ago
  
  19b0cd1d
Jan 06, 2024
- test case for experiment ids to avoid dups and valide. · 45e12304
  Blake Fitch authored 1 year ago
  
  45e12304
Oct 16, 2023
- add ability to accept undefined users when Registering new experiments -- mostly for test right now · 53234084
  Blake Fitch authored 1 year ago
  
  View commits for tag STAG-2023-10-26-12-08-59 STAG-2023-10-26-12-08-59
  
  53234084
May 22, 2023
- fix bug in error message · a7f1e951
  Blake Fitch authored 1 year ago
  
  View commit a7f1e951 3 tags
  
  a7f1e951
Mar 14, 2023
- reduce warning and debug output · 517e47a6
  Blake Fitch authored 2 years ago
  
  View commits for tag STAG-2023-03-21-21-18-42 STAG-2023-03-21-21-18-42
  
  517e47a6
Mar 13, 2023
- fix var name in error path · 639b41e1
  Blake Fitch authored 2 years ago
  
  View commits for tag STAG-2023-03-14-11-20-06 STAG-2023-03-14-11-20-06
  
  639b41e1
Mar 12, 2023
- remove debug line · 6e9ff4b0
  Blake Fitch authored 2 years ago
  
  View commits for tag STAG-2023-03-13-22-21-41 STAG-2023-03-13-22-21-41
  
  6e9ff4b0
- remove debug line · e3720171
  Blake Fitch authored 2 years ago
  
  View commits for tag STAG-2023-03-12-14-01-50 STAG-2023-03-12-14-01-50
  
  e3720171
Mar 08, 2023
- add documentation of how to recreate irods sha2 format · 088fd3d2
  Blake Fitch authored 2 years ago
  
  View commit 088fd3d2 3 tags
  
  088fd3d2
Mar 07, 2023

change to a streaming transfer of data to from landing zone to irods assuming... · 66abd535

Blake Fitch authored 2 years ago

change to a streaming transfer of data to from landing zone to irods assuming no dups, but handling them if they happen. hope to avoid blowing memory cache in the uploader

66abd535

Jun 23, 2022
- return right away if irods_sesh is None · 6ff0a472
  Blake Fitch authored 2 years ago
  
  6ff0a472
Jun 04, 2022
- change confirmed_put() to use a timestamped temp file for initial upload... · e0952ce5
  Blake Fitch authored 2 years ago
  
  change confirmed_put() to use a timestamped temp file for initial upload rather than just blah.IMA_tmp
  e0952ce5
May 28, 2022
- check before examining old SHA512SUMB64 key because they aren't always there · 82c53ef9
  Blake Fitch authored 2 years ago
  
  82c53ef9
May 26, 2022
- update log lines · c9bd0cbe
  Blake Fitch authored 2 years ago
  
  c9bd0cbe
- typo · 722e6a17
  Blake Fitch authored 2 years ago
  
  722e6a17
- set connection timeout to 6000 secs · 5e586315
  Blake Fitch authored 2 years ago
  
  5e586315
- set irods session timeout to 0 -- or hopefully infinite · b1b154bd
  Blake Fitch authored 2 years ago
  
  b1b154bd
- updated confirmed put to not create so many dated dups on failure by using a... · e83f4f80
  Blake Fitch authored 2 years ago
  
  updated confirmed put to not create so many dated dups on failure by using a tmp target and then moving it into place on success
  e83f4f80
May 25, 2022

updated confirmed put to not create so many dated dups on failure by using a... · 1b526665

Blake Fitch authored 2 years ago

updated confirmed put to not create so many dated dups on failure by using a tmp target and then moving it into place on success

1b526665

updated confirmed put to not create so many dated dups on failure by using a... · 09c91659

Blake Fitch authored 2 years ago

updated confirmed put to not create so many dated dups on failure by using a tmp target and then moving it into place on success

09c91659

May 02, 2022
- fix confirmed put move dup out of the way · 21a9695a
  Blake Fitch authored 2 years ago
  
  21a9695a
May 01, 2022
- spelling · 3260c4d9
  Blake Fitch authored 2 years ago
  
  3260c4d9