Comments added in scripts

causalDiscoveryOnSimulations/calcCandidatesLevel1.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [candidatesHsicLevel1, dependencyThresholdHsic]...
 	= calcCandidatesLevel1(info, y1, r)
   

causalDiscoveryOnSimulations/calcDependencyY0Y1.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [statHSIC, pHSIC] = calcDependencyY0Y1(y0, y1, type)
 % calculate dependency between P^i and M^i variables
 pars.pairwise = true;	

causalDiscoveryOnSimulations/calcDependencyY1R.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [statHSIC, pHSIC] = calcDependencyY1R(y1, r)
 % calculate dependency between M^i and R 
 pars.pairwise = true;	

causalDiscoveryOnSimulations/calcErrorCausalityFpFn.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [statResultsTable] = calcErrorCausalityFpFn
 %CALCERRORCAUSALITY Summary of this function goes here
 %   Detailed explanation goes here

causalDiscoveryOnSimulations/createNodesWithNoiseTerms.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [Y] = createNodesWithNoiseTerms(n,nTrials)
 mu = 0;
 Y = nan(nTrials, n);

causalDiscoveryOnSimulations/detectCausalFeatures.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [outputTableHsicHsicSub] =...
     detectCausalFeatures(info)
 

causalDiscoveryOnSimulations/doCausalityTest.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function outputTable = doCausalityTest(info, y0, y1,  r, group, candidatesLevel1, dependencyThreshold)
 
 nMethods = 1;

causalDiscoveryOnSimulations/findCausesFromConnections.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [dirCauses, indirCauses] = findCausesFromConnections(connections)
 %FINDCAUSESFROMCONNECTIONS Summary of this function goes here
 %   Detailed explanation goes here

causalDiscoveryOnSimulations/findChildren.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function children = findChildren(children, connections, node)
 %FINDCHILDRED Summary of this function goes here
 %   Detailed explanation goes here

causalDiscoveryOnSimulations/mainSimulation.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [causesFoundHsic] = mainSimulation(y0, y1, r)
 
 info.minDependencyThreshold = 0.05;

causalDiscoveryOnSimulations/plotFnFpForSpars.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [h, hm1, hm2] = plotFnFpForSpars(iSpars, nSamplesUniqueValues, nodesUniqueValues,...
     statResultsTable, sparsenessUniqueValues, allColors)
 
@@ -11,4 +15,4 @@ plot(nSamplesUniqueValues, fpAll,'color', allColors(iSpars,:), 'Markersize', 9,
 plot(nSamplesUniqueValues, fnAll,'color', allColors(iSpars,:), 'Markersize', 9, 'Marker', 's', 'LineStyle', '--', 'LineWidth', 1.5); hold on;
 h = plot(nSamplesUniqueValues, fpAll,'color', allColors(iSpars,:), 'LineStyle', '-','LineWidth', 1.5); hold on;
 
-end
\ No newline at end of file
+end

causalDiscoveryOnSimulations/plotStatistics.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 clear all
 a = load('statTableCausesGraphsFPandFN_GNChangeSTDPR025_5.mat');
 b = load('statTableCausesGraphsFPandFN_GNChangeSTDPR025_20.mat');

causalDiscoveryOnSimulations/simulateGraph2.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
+% Main entry point script for the simulations
 % simulate graph with assumptions 1-5:
 
+
 clear all
 close all
 tic

causalDiscoveryOnSimulations/visualizeGraph.m

+% Copyright (C)
+% Max Planck Institute for Intelligent Systems,
+% Atalanti A. Mastakouri atalanti.mastakouri@tuebingen.mpg.de
+
 function [g, bg] = visualizeGraph(n, allConnections)
 
  m = 2*n+1;