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Created with Raphaël 2.2.07Jul61Aug25May13825Mar21Dec1816424Nov19Oct986125Sep24108328Aug126520Jul730Jun12111020May14Apr76312Mar28Feb241330Jan29211514109817Oct130Sep261030Aug29261615630Jul12108425Jun181711526Apr2119Mar18117525Feb2120197531Jan2818161119Dec1728Nov271926Oct2523221828Sep272119181714121131Aug3028222120123Jul229Jun2711630May3Apr28Mar19919Feb26Jan2423adjusted 31P T2 filesmastermasteradjusted fMRS analysis used for the papernot needednot neededautomatic 31P TE series data preprocessing, LCModel fitting, T2 calculationchanged titlecreated .print file for paper revision, but commented out afterwardsMerge branch 'master' of https://gitlab.tuebingen.mpg.de/AG_Henning/MR_spectroS.gitcreate .print file from LCModel fit (needed for paper revision, but commented out afterwards)Add README.mdAdd LICENSEProFit-1D paper versionMerge branch 'master' of https://gitlab.tuebingen.mpg.de/AG_Henning/MR_spectroS.gitUpdated createSimulatedSpectra and createSummedSpectrum to include stats about SNR etc. Changed MM spectrum to have 0 em (Lorentz) modeldoublePointedArrowInside.m is a new function used for plotBaselines_and_fitted_spectraMoved the table from evaluateProFitFittingParameters to an Excel fileAdapted plotBaselines_and_fitted_spectra.m to include also the difference spectrum between baselinesChanged plot orientation and added correlation plots for GlxAdded also small metabolites to plot_all_test_data_profitChanged for fMRSMerge branch 'master' of https://gitlab.tuebingen.mpg.de/AG_Henning/MR_spectroS.gitJohannas fMRS commitThe more correct ppm shift of water is at 4.66 ppm.Merge branch 'master' of https://gitlab.tuebingen.mpg.de/AG_Henning/MR_spectroS.gitMinor visualization changes in DF_processing. lineBroadeningExchangingPeaks.m and plot_mean_std_of_spectra_DF.mVisualization changes in files from createTestDataUpdated calculateMolal_MolarConcentrations.m with the tissue densities calculationWorked on how to plot portrait figures. It is complicated. Don't scale the figure too much in the height to avoid rescaling of text.Just restructured the code of plotSimulationResults.m to allow better modifications.Cosmetic changesplotBaselines_and_fitted_spectra with the new pathCleaned up a bit and adapted plot_all_test_data_profit code to new Bland-Altman plots. However the code is still not cleanChanged plot Simulation results to plot 4 rows with the resultsAdded the export and fitting also of the MC water signalsAdded option to export water mix in ExportLCMRawMeans emit nans in evaluateProFitFittingParametersChanged a lot of things in plot_all_test_data_profitAdded water concentration calculations for ProFitPlotting NaNs in plotSimulationResultsAdded NaNs for low concentration (=0) metabolites when plotted as difference spectrum.