Commits · 92689f4ac94e6ffbf931468f2dde5a5779a0b6c6 · AG_Henning / MR_spectroS · GitLab

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Dec 16, 2020
- Changed plot Simulation results to plot 4 rows with the results · 92689f4a
  Tamas Borbath authored 4 years ago
  
  92689f4a
- Added the export and fitting also of the MC water signals · e823a650
  Tamas Borbath authored 4 years ago
  
  e823a650
- Added option to export water mix in ExportLCMRaw · aad3d1bb
  Tamas Borbath authored 4 years ago
  
  aad3d1bb
Dec 04, 2020
- Means emit nans in evaluateProFitFittingParameters · 287705d4
  Tamas Borbath authored 4 years ago
  
  287705d4
- Changed a lot of things in plot_all_test_data_profit · 02559a6c
  Tamas Borbath authored 4 years ago
  
  02559a6c
- Added water concentration calculations for ProFit · e401d52a
  Tamas Borbath authored 4 years ago
  
  e401d52a
- Plotting NaNs in plotSimulationResults · 2c537558
  Tamas Borbath authored 4 years ago
  
  2c537558
- Added NaNs for low concentration (=0) metabolites when plotted as difference spectrum. · 801169b7
  Tamas Borbath authored 4 years ago
  
  801169b7
- Cosmetics · 0ef6a229
  Tamas Borbath authored 4 years ago
  
  0ef6a229
Nov 24, 2020
- Some better plots for howIsFittingDone · 86972e0c
  Tamas Borbath authored 4 years ago
  
  86972e0c
Oct 19, 2020
- Changed files to new vector naming · 2ff2f25b
  Tamas Borbath authored 4 years ago
  
  2ff2f25b
Oct 09, 2020
- Corrected stupid mistake with paths for reference concentrations · e06159bc
  Tamas Borbath authored 4 years ago
  
  Made plots much nicer
  e06159bc
Oct 08, 2020
- plotSimulationResults with horizontal figure setup · 432a2465
  Tamas Borbath authored 4 years ago
  
  432a2465
- Made plotBaselines_and_fitted_spectra nicer. Changed path. · 5c90c916
  Tamas Borbath authored 4 years ago
  
  5c90c916
Oct 06, 2020
- Better visualization plotSimulationResults · 2d87a71b
  Tamas Borbath authored 4 years ago
  
  2d87a71b
Oct 01, 2020
- Made plotSimulationResults plot much nicer figures · a35bfb21
  Tamas Borbath authored 4 years ago
  
  a35bfb21
- Adapted plot_all_test_data_profit and evaluateProFitFittingParameters to have... · 9c9d42c2
  Tamas Borbath authored 4 years ago
  
  Adapted plot_all_test_data_profit and evaluateProFitFittingParameters to have the option to select between fit settings folders. Also showing FQNs for profit
  9c9d42c2
- Made plot_ProFit_Metabolites_Fit show nicer in the plots · 3f64119f
  Tamas Borbath authored 4 years ago
  
  3f64119f
- Removed the unused df2 simulations and added the refFreqPpm to fitting_simulated_test_data_profit.m · ba21d880
  Tamas Borbath authored 4 years ago
  
  ba21d880
Sep 25, 2020
- Refractoring · 25675e18
  Tamas Borbath authored 4 years ago
  
  25675e18
- Much nicer evaluateProFitFittingParameters · 91fdc22c
  Tamas Borbath authored 4 years ago
  
  91fdc22c
- Added FQN to the plotting of the fitting_all_test_data results · b7450b26
  Tamas Borbath authored 4 years ago
  
  b7450b26
Sep 24, 2020
- Removed the not useful anymore conc2, conc3 simulations and added the em... · d937f722
  Tamas Borbath authored 4 years ago
  
  Removed the not useful anymore conc2, conc3 simulations and added the em simulations for fitting_simulated_test_data_profit. Also removed em_g
  d937f722
- Added howIsFittingDone function · 5ecad1b6
  Tamas Borbath authored 4 years ago
  
  5ecad1b6
- More useful figures from plotBaselines_and_fitted_spectra · ddec74f4
  Tamas Borbath authored 4 years ago
  
  ddec74f4
- Added em to evalutateProFitFittingParameters and corrected mistake for... · 931ec319
  Tamas Borbath authored 4 years ago
  
  Added em to evalutateProFitFittingParameters and corrected mistake for plotting mean values of vectors: em, conc, T2
  931ec319
- Adapted plot_all_test_data_profit to the anonimized data set · 274897b7
  Tamas Borbath authored 4 years ago
  
  274897b7
- Added em simulations to createSimulatedSpectra. · c80a6bab
  Tamas Borbath authored 4 years ago
  
  c80a6bab
- Removed em_g · d85d82e1
  Tamas Borbath authored 4 years ago
  
  d85d82e1
Sep 08, 2020
- Updated fitting_simulated_test_data_profit to the more extensive simulations · 2d00660b
  Tamas Borbath authored 4 years ago
  
  2d00660b
- Updated plotBaselines_and_fitted_spectra to work also for not using plot_dkntmn · 165c7612
  Tamas Borbath authored 4 years ago
  
  165c7612
- Made fitting_all_test_data_profit adapted to anonimized dataset · 9af954a3
  Tamas Borbath authored 4 years ago
  
  9af954a3
- Expanded plotSimulationResults with baseline data · f5566821
  Tamas Borbath authored 4 years ago
  
  Added plotSimulationResults2 to show dkntmn dependence
  f5566821
- Expanded plotBaselines_and_fitted_spectra to provide much better visualizations · 5dc5ea1f
  Tamas Borbath authored 4 years ago
  
  5dc5ea1f
- Added phased lipid peak and zero baseline options to getLCModelBaseline · f47ddc6a
  Tamas Borbath authored 4 years ago
  
  f47ddc6a
- Added some better plotting options for createSimulatedSpectra · 06a35626
  Tamas Borbath authored 4 years ago
  
  06a35626
Sep 03, 2020
- Added plotBaselines_and_fitted_spectra.m to create comparison plots of the... · 2041509d
  Tamas Borbath authored 4 years ago
  
  Added plotBaselines_and_fitted_spectra.m to create comparison plots of the input and fitted baselines
  2041509d
- Create more simulated spectra (all setups 15 cases). In createSummedSpectrum save also the baseline · 4e80f6ec
  Tamas Borbath authored 4 years ago
  
  4e80f6ec
- Corrected the reconstruct_all_test_data_profit to really cover all data. · fbc7b4b9
  Tamas Borbath authored 4 years ago
  
  fbc7b4b9
- Added option to plot the fitting results from ProFit and LCModel where the... · 7cd5eb01
  Tamas Borbath authored 4 years ago
  
  Added option to plot the fitting results from ProFit and LCModel where the baseline is not subtracted from the spectra. Most likely a useless option, because the spectra can be weird afterwards
  7cd5eb01