Minor visualization changes in DF_processing. lineBroadeningExchangingPeaks.m...

Minor visualization changes in DF_processing. lineBroadeningExchangingPeaks.m and plot_mean_std_of_spectra_DF.m

DF_processing/lineBroadeningExchangingPeaks.m

@@ -89,10 +89,14 @@ plotPpm = true;
 legend('DF_{5.75} k=6.76s^{-1}','DF_{6.80} k=2.346s^{-1}','DF_{8.20} k=9.32s^{-1}','DF_{8.30} k=13.8s^{-1}','DF_{8.50} k=3.31s^{-1}', 'NAA k=0.74s^{-1}');
 if plotPpm
     xlim([5.7 8.6])
+    xlim([4.6 8.6])
 else
     xlim([400 1600])
 end
-ylim([-0.001 0.1])
+ylim([-0.001 0.25])
+set(gca,'xdir','reverse')
+xlabel('\delta (ppm)')
+ylabel('Signal (arb. u.)')
 
 % results of FWHM
 %DF58 = 2.17 Hz

DF_processing/plot_mean_std_of_spectra_DF.m

@@ -10,6 +10,7 @@ TEs = [24; 32; 40; 52; 60];
 colors = {[0 0.7 0]; [1 0 0]; [0 0 1]; [0 0 0]; [0 0.5 0.5];};
 numberOfTEs = length(TEs);
 offsetStep = 2.7e-5;
+offsetStep = 1.e-5;
 offSetBase = offsetStep * (numberOfTEs + 1); 
 
 for indexTE = 1:numberOfTEs
@@ -99,14 +100,14 @@ end
 
 %%
 figure(1)
-stdAlpha = 0.4;
-hold on
-h = area(ppmScale,[(meanSpectrum - stdSpectrum) + offset (stdSpectrum * 2)]);
-h(1).FaceColor = 'none';
-h(2).FaceColor = colorSpectrum;
-h(2).FaceAlpha = stdAlpha;
-h(1).EdgeColor = 'none';
-h(2).EdgeColor = 'none';
+% stdAlpha = 0.4;
+% hold on
+% h = area(ppmScale,[(meanSpectrum - stdSpectrum) + offset (stdSpectrum * 2)]);
+% h(1).FaceColor = 'none';
+% h(2).FaceColor = colorSpectrum;
+% h(2).FaceAlpha = stdAlpha;
+% h(1).EdgeColor = 'none';
+% h(2).EdgeColor = 'none';
 hold on
 pSpectrum = plot(ppmScale,meanSpectrum + offset, 'LineWidth',2, 'Color', colorSpectrum);
    
@@ -114,7 +115,8 @@ xlim([5.5 9.5]);
 set(gca,'xDir','reverse')
 set(gca,'LineWidth',1);
 set(gca,'ytick',[])
-xlabel('[ppm]');
+xlabel('\delta (ppm)');
+ylabel('Signal (arb.u.)');
 title('Spectra mean and standard deviation')
 % title(['Spectra TE ' num2str(TE) ' ms'])
 end
\ No newline at end of file