From d045f677e4221919705e4b6336ef2adb9a5ad264 Mon Sep 17 00:00:00 2001
From: Malte Kuhlmann <malte-kuhlmann@web.de>
Date: Thu, 10 Nov 2016 23:00:45 +0100
Subject: [PATCH] NaNs in input data are now changed to zeros to make the
viewer functional for such files.
---
vviewer/loadImage.py | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/vviewer/loadImage.py b/vviewer/loadImage.py
index a2e93d2..bfcbbbb 100644
--- a/vviewer/loadImage.py
+++ b/vviewer/loadImage.py
@@ -158,6 +158,12 @@ def loadImageFromFile(filename, pref, f_type):
except RuntimeError:
print("Cannot load .v file given!")
+ # if data contain NaNs convert to zero
+ if np.isnan(image.get_data()).any():
+ notnan = image.get_data()
+ notnan[np.isnan(image.get_data())] = 0
+ image = Nifti1Image(notnan, image.affine)
+
# allow 2d-images here:
if len(image.get_data().shape) == 2:
image = Nifti1Image(np.atleast_3d(image.get_data()), image.affine)
--
GitLab