From e401d52ab71162a5982a4877312c749cf50c3d9c Mon Sep 17 00:00:00 2001
From: Tamas Borbath <tamas.borbath@tuebingen.mpg.de>
Date: Fri, 4 Dec 2020 11:36:23 +0100
Subject: [PATCH] Added water concentration calculations for ProFit
---
createTestData/fitting_all_test_data_profit.m | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/createTestData/fitting_all_test_data_profit.m b/createTestData/fitting_all_test_data_profit.m
index 7b7bf33..3564864 100644
--- a/createTestData/fitting_all_test_data_profit.m
+++ b/createTestData/fitting_all_test_data_profit.m
@@ -96,6 +96,7 @@ for indexSubj = 1:numberOfSubjects
% load([filenameWater '.mat'], 'aWater', 'maxWaterPeak');
concentrations = cell(numberOfTEs,length(namingSuffixesAve));
+ concentrations_H2O = cell(numberOfTEs,length(namingSuffixesAve));
if ~fitLCModel
FQNs = cell(numberOfTEs,length(namingSuffixesAve));
FQNs2 = cell(numberOfTEs,length(namingSuffixesAve));
@@ -136,6 +137,8 @@ for indexSubj = 1:numberOfSubjects
end
[concentrations{indexTE,indexAverageDelete, indexCoilDelete}, activeMetabolites, FQNs{indexTE,indexAverageDelete, indexCoilDelete}, FQNs2{indexTE,indexAverageDelete, indexCoilDelete}] = ...
plot_ProFit_Metabolites_Fit([filenameData, '_profit.mat'],dataExportPathTE, 'Met', true);
+ load([dataExportPathTE, filenameData, '_profit_H2O.mat'],'concH2O');
+ concentrations_H2O{indexTE,indexAverageDelete, indexCoilDelete}=concH2O;
end
close all
end
@@ -145,6 +148,7 @@ for indexSubj = 1:numberOfSubjects
save([dataExportPath{indexSubj}, 'concentrations' truncSuffix '.mat'], 'concentrations');
else
save([dataExportPath{indexSubj}, 'concentrations', truncSuffix '_profit.mat'], 'concentrations', 'activeMetabolites', 'FQNs', 'FQNs2');
+ save([dataExportPath{indexSubj}, 'concentrations', truncSuffix '_H2O_profit.mat'], 'concentrations_H2O');
end
end
--
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